1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' |
TTCACAATGTGCATTTGTTATTGACAAGATTATTGAAACCACATCTAGTTCAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGgttgagaaatcttccacttattgctgaaccatattttttggttgtgtttatggtctaagttacctgtacacag
species | Oryza sativa |
transcript | LOC_Os07g30980.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAG ATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTEST: gi|58662033|gb|CK050713.1|CK050713
genomic: CAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGgttgagaaat ... ctgtacacagATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTT
EST: CAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAG ATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTEST: gi|88592693|gb|CI710815.1|CI710815
genomic: CAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGgttgagaaat ... ctgtacacagATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTT
EST: TATCGCAGACAG ATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTEST: gi|88371820|gb|CI680930.1|CI680930
genomic: TATCGCAGACAGgttgagaaat ... ctgtacacagATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTT
EST: TATCGCAGACAG ATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTT
genomic: TATCGCAGACAGgttgagaaat ... ctgtacacagATCACTGGCAAAGCATTCCAGGCGTCATTCCGCAACAGAAAAATTCCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACAATGTGCATTTGTTATTGACAAGATTATTGAAACCACATCTAGTTCAGTTGAAGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGgttgagaaatcttccacttattgctgaaccatattttttggttgtgtttatggtctaagttacctgtacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG