1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAACAATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttaccgagaggcctcatttttttacagtatcttatgtcatgcattctatgttttttttttttgaaaagaatgtattctatggtttctccttatgg...
species | Oryza sativa |
transcript | LOC_Os06g50300.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|87016979|gb|CI286115.1|CI286115
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|58684599|gb|CK073286.1|CK073286
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|32947850|gb|BP184422.1|BP184422
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|32947910|gb|BP184482.1|BP184482
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTTACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|29627895|gb|CB632906.1|CB632906
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGEST: gi|29659228|gb|CB655503.1|CB655503
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
EST: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAG GTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
genomic: AATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttacc ... tttgttgcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAACAATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttaccgagaggcctcatttttttacagtatcttatgtcatgcattctatgttttttttttttgaaaagaatgtattctatggtttctccttatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa