1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGTGTCTCTTCTTCCGCAAATTTTTGGGCTCTCATAATGGATGCTGGGACTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggctatttctccaccccttccatccagttttgatgaatccagagtcctgactccatattaccttgtttgtacatag
species | Oryza sativa |
transcript | LOC_Os03g57940.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|88676859|gb|CI730972.1|CI730972
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|87024580|gb|CI259295.1|CI259295
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: TTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|88674676|gb|CI728789.1|CI728789
genomic: TTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGACCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|88954921|gb|CI720286.1|CI720286
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|88675791|gb|CI729363.1|CI729363
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|87021813|gb|CI277980.1|CI277980
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: AAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|29616080|gb|CB621092.1|CB621092
genomic: AAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|58685128|gb|CK073815.1|CK073815
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|88666711|gb|CI718847.1|CI718847
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|58684567|gb|CK073254.1|CK073254
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCAEST: gi|58672924|gb|CK061610.1|CK061610
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
EST: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAG GATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
genomic: CTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggc ... ttgtacatagGATTGGATTATGGAGCAGTGGGAGAAGAATTATTACATAACGGCAATAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGTCTCTTCTTCCGCAAATTTTTGGGCTCTCATAATGGATGCTGGGACTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtgcactggctatttctccaccccttccatccagttttgatgaatccagagtcctgactccatattaccttgtttgtacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT