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GCTGATGCTTTTGCCAAGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcgaaagatccttttgatttattctcactctaattgctagacacctgaaccgcaaggtctgtctgattcttgttctgttacccaaagtacttt...
species | Oryza sativa |
transcript | LOC_Os02g45650.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCATGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88489314|gb|CI426586.1|CI426586
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88831123|gb|CI080547.1|CI080547
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTGGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88536315|gb|CI466060.1|CI466060
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88526548|gb|CI454616.1|CI454616
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88994093|gb|CI116057.1|CI116057
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCCATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88248064|gb|CI246682.1|CI246682
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|15847722|gb|BI795998.1|BI795998
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTTCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|86903727|gb|CI300581.1|CI300581
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|86487701|gb|CI130334.1|CI130334
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: CTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTAATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|86259979|gb|CI065852.1|CI065852
genomic: CTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|86865883|gb|CI335514.1|CI335514
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88285767|gb|CI510027.1|CI510027
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AACCTGGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|86490395|gb|CI133028.1|CI133028
genomic: AACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88223219|gb|CI223068.1|CI223068
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|5003204|gb|AU068353.1|AU068353
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88845492|gb|CI084417.1|CI084417
genomic: AACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTGGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|29634138|gb|CB639147.1|CB639147
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCANEST: gi|88480857|gb|CI418128.1|CI418128
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|88837192|gb|CI078552.1|CI078552
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|89177897|gb|CI391076.1|CI391076
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATCCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACEST: gi|89171171|gb|CI109695.1|CI109695
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
EST: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAG GAAGAGAACTTATGTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
genomic: AGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcg ... caaatttcagGAAGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGCTTTTGCCAAGAACCTTGGGTATGCTCCTCAGCTCCGTGCAGCCCTTGTTAAACTACAGgtaaccatcgaaagatccttttgatttattctcactctaattgctagacacctgaaccgcaaggtctgtctgattcttgttctgttacccaaagtacttt
- - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC