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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaattatttaaccaactttcttcttttctctgactacttggtccattttaaatagatcttattgattttag

Basic information

species Oryza sativa
transcript LOC_Os11g48090.4
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g48090.4 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 11
TCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaattatttaacca-actttcttcttttctctgactacttggtccattttaaatagatcttattgattttag----------------------
|||||||||| || || |||||  | |||||||| ||||||||||||||||||||    |        |||  | | ||||| || ||  || ||  ||   |    | |    |||||  ||  ||  |||                      
TCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGgttttgccctgatcctaataatattttctcctattagctaacctctctatgttatctgtcaagatccaatc-atcctagaagcttaatttgttgggtgaag

upper sequence: LOC_Os11g48090.4 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 11
TCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaattatttaaccaactttcttcttttctctgactacttggtccattttaaatagatcttattgattttag
|||||||||| || || |||||||| |||||||| ||||| ||||||||||||||     |  | ||   ||||   ||  | ||  ||  || || |   |||   |  ||      || || | |  ||
TCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAGACATACTACCAGgt-ttcttcctcatcctaccagtcttgcttttacctaaga-tattatttccgcatgtaac----ttttttcactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596568|gb|CK007096.1|CK007096
EST:     GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAG                         GAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
genomic: GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaa ... ttgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
EST: gi|29682976|gb|CB679251.1|CB679251
EST:     GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAG                         GAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
genomic: GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaa ... ttgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT