1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCAAAACATTCCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtttagaaaattatgatgtagaaacatctatgtgtcttgctttcactggatgctctttgctggcttaaacattgcatatacatccttgctttaaacgacataactgtcagtaaacataagtggttttttttttctaaacaattgttttgcag
species | Oryza sativa |
transcript | LOC_Os04g43750.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|88265771|gb|CI376673.1|CI376673
genomic: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: AAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|88246571|gb|CI246420.1|CI246420
genomic: AAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: CCCTGTNATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|88849633|gb|CI089739.1|CI089739
genomic: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|88837129|gb|CI078489.1|CI078489
genomic: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: GTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|86430015|gb|CI082438.1|CI082438
genomic: GTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: CCCTGTAATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCAEST: gi|66921821|gb|CX108669.1|CX108669
genomic: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
EST: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAG GCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
genomic: CCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtt ... tgttttgcagGCGATGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAAACATTCCCTGTTATCGTTTTGCCCAAGGAAAAGCTTGTTGACACCAATGGTGCAGgtagtcggtttagaaaattatgatgtagaaacatctatgtgtcttgctttcactggatgctctttgctggcttaaacattgcatatacatccttgctttaaacgacataactgtcagtaaacataagtggttttttttttctaaacaattgttttgcag
- - - - - - - - - - - - - - - AAGGAA