1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGGTTTACCTTCCTAGTATGGTTAGGTAGGATGCTCCCACCTGAACTTGTGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttttactctctagtcaatggcaatgcttgctataaattcatcaagaagggcagagcatatttccattttattatgtcctaaaataaagtctca...
species | Oryza sativa |
transcript | LOC_Os04g04020.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGAACAACATTCTTGGATTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGEST: gi|29633802|gb|CB638811.1|CB638811
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAG
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATAEST: gi|58590900|gb|CF989208.1|CF989208
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGAGAATGTGAEST: gi|88265583|gb|CI376485.1|CI376485
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAGAGAATGTGA
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGEST: gi|86874758|gb|CI325269.1|CI325269
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAG
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGEST: gi|87027452|gb|CI272217.1|CI272217
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAG
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATAEST: gi|88255805|gb|CI353676.1|CI353676
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGEST: gi|86866837|gb|CI343188.1|CI343188
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAG
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGEST: gi|218496502|gb|FG956556.1|FG956556
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAG
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATAEST: gi|86436774|gb|CI118496.1|CI118496
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATA
EST: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAG GTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATA
genomic: TGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttt ... tatcttgcagGTTCAATTGAGAGAATGTGATAACGAGTACTCCAGAAATTTCATGAAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTTTACCTTCCTAGTATGGTTAGGTAGGATGCTCCCACCTGAACTTGTGAACAACATTCTTGGAGTCAGCTTGGCAAACTTCCCCGATCTATCAAAGgtacactttttactctctagtcaatggcaatgcttgctataaattcatcaagaagggcagagcatatttccattttattatgtcctaaaataaagtctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa