Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAGgtattcatcctcctagtcctatcttgcttgcatgagaatgccaagtatttgttttcagttttccaccttgtggcataaggacattatgtaggacaatgtg...

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G108416_T01 (Zea mays), 5'ss of exon 12
GTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAGgtattcatcctcctagtc--ctatcttgcttgcatgagaatgccaagtatttgtt-ttcagttttccaccttgtggcataaggacattatgtaggacaatgtg
||||||||||||||||||||||||||||| || ||||| ||  ||||||| |||||||||| ||| |  |  || | || ||    |   |       | || |  | |||  |    |||   |     |     ||  ||| |    | |   
GTGACATCTGGAATGAGTCCAGCTTTCAATCTTTATGGGTGTGCCTTGATTGgtattcatcttcccacccacctttttttctatttttgcatccttgtgcatctcctcttcgatcgcacacaaagcattttctttccaccatggattttatt---

upper sequence: LOC_Os03g24460.3 (Oryza sativa), 5'ss of exon 12
lower sequence: PP1S81_64V6.2 (Physcomitrella patens), 5'ss of exon 12
GTGACATCTGGAATGAGTCCAGCTTTCAACCTCTATGGATGCACCTTGATAGgta---ttcatcctcc-tagtcctatcttgcttgc-atgagaatgccaagtatttgttttcagttttccaccttgtggcataaggacattatgtaggacaatgtg--------------
   ||||| ||||||||||||||||| ||| ||||||||||||  || || |||    ||| | ||    |    | | |||||| |  |   |||| | |  | |   |||  |||      | |  | ||   | |  | ||      || | ||              
ACTACATCAGGAATGAGTCCAGCTTTTAACGTCTATGGATGCAATTTAATTGgttggtttcgttctttgcaacaatttattgctttctgttttaatggccatcagtgtcttt--gttgcatcgcataagacacccgaaattgatcctcaccagtttgtcacgttattgcag