1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGgtaagggtaatcattatcagctcattagggtgcagatgacccctctgtatgtagcgtcattttccaaggaagggaaaaaaaaacttttttagtgattcaa...
species | Oryza sativa |
transcript | LOC_Os03g01890.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAG AGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAAEST: gi|58685429|gb|CK074116.1|CK074116
genomic: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGgtaagggtaa ... ggtatttcagAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAG AGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAAEST: gi|58658713|gb|CK047393.1|CK047393
genomic: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGgtaagggtaa ... ggtatttcagAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAG AGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAA
genomic: TTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGgtaagggtaa ... ggtatttcagAGTGTTCCTCCAGCAGTACTGGTTCGATTTCTGAGGGAGCATAGATCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAACTCAACTAAGAAAATTAGGAGTAACAGCAATGCTGGCATCGCCTTTGGAGCCCCCGGAGGTATTATATGTGCTAAGGCATCAATGTTACTGCAGgtaagggtaatcattatcagctcattagggtgcagatgacccctctgtatgtagcgtcattttccaaggaagggaaaaaaaaacttttttagtgattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG