1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATGACAATGAGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcag
species | Oryza sativa |
transcript | LOC_Os03g01750.5 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|29640153|gb|CB645162.1|CB645162
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGGCCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|24208785|gb|AU225812.1|AU225812
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|29656092|gb|CB652367.1|CB652367
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88688617|gb|CI732193.1|CI732193
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88311093|gb|CI658006.1|CI658006
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|58688312|gb|CK076999.1|CK076999
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAEST: gi|88689968|gb|CI734047.1|CI734047
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCA
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88693785|gb|CI735362.1|CI735362
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|2428616|gb|C73079.1|C73079
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATACCTACGTCCAG GTCTCCAGGGATGGTACCANCGATGAAGAGNGAGA-TTAAGGGN-CGTTT-EST: gi|87007869|gb|CI296847.1|CI296847
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|29626840|gb|CB631851.1|CB631851
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88690033|gb|CI734112.1|CI734112
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88689057|gb|CI732633.1|CI732633
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|58696174|gb|CK084861.1|CK084861
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|58694687|gb|CK083374.1|CK083374
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88963923|gb|CI031256.1|CI031256
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|27549021|gb|CA767031.2|CA767031
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88688572|gb|CI732148.1|CI732148
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|29656147|gb|CB652422.1|CB652422
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88689587|gb|CI733163.1|CI733163
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATGACAATGAGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT