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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATGACTTCACCCCCAAGGTGTCAGACTTTGGCCTAGCAAGAACAGCCATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttgatctgaaattattatcttactacctgtagttggttaacatcctcaccttaaaaagattatgaactctttttag

Basic information

species Oryza sativa
transcript LOC_Os01g51290.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51290.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G330298_T01 (Zea mays), 5'ss of exon 6
AACATGACTTCACCCCCAAGGTGTCAGACTTTGGCCTAGCAAGAACAGCCATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttgatctgaaattattatctt-actacct-gtagttggtt-aacatcctcaccttaaa----aagattatg---aactctttttag
|||||||||||||||| |||||||||||||||||| ||||||| |||||  | |||||||| || |||||||||||||||||||| ||||||||||| ||||| | |   ||||||||||| |||||| ||| | |  |||||| || || | | ||| || | |    || ||| ||   || |  | ||||
AACATGACTTCACCCCAAAGGTGTCAGACTTTGGCTTAGCAAGGACAGCTTTGGGTGAGGGAAACGAGCATATTTCAACTCGTGTCATGGGAACTTTTGGgtatgcta-aatctgaaattactatctttacttcttcatagttgattcaataccatcaactcatattacaaaattctggtcaatttctcttag

upper sequence: LOC_Os01g51290.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G404207_T01 (Zea mays), 5'ss of exon 5
AACATGACTTCACCCCCAAGGTGTCAGACTTTGGCCTAGCAAGAACAGCCATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttgatctgaaattattatcttactacct--gtagttggtt-aacatcctcaccttaa-----aaagattatg---aactctttttag
|||||||||||||||| |||||||| ||||| ||| ||||||| |||||  | |||||||| || |||||||||||||||||||||||||||||||| ||||| | |   |||||||  || ||||||   |  |   ||| || || ||||||  || ||||      |||  |||||   || | || ||||
AACATGACTTCACCCCAAAGGTGTCGGACTTCGGCTTAGCAAGGACAGCTCTGGGTGAGGGAAACGAGCATATTTCAACTCGTGTTATGGGAACTTTTGGgtacgctg-aatctgaacctactatctttacatttttatagatgattcaacatcaccaacttatgttccaaattttatggtcaatttttcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88735534|gb|CI759042.1|CI759042
EST:     ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGG                         GTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
genomic: ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttg ... ctctttttagGTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
EST: gi|58665758|gb|CK054444.1|CK054444
EST:     ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGG                         GTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
genomic: ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttg ... ctctttttagGTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
EST: gi|58678543|gb|CK067230.1|CK067230
EST:     ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGG                         GTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
genomic: ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttg ... ctctttttagGTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
EST: gi|313080020|gb|HO213340.1|HO213340
EST:     ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGG                         GTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA
genomic: ATAGGTGAGGGGAATGAGCATATTTCAACTCGTGTTATGGGAACTTTCGGgtaagttttg ... ctctttttagGTATGTTGCTCCTGAATACGCAATGACTGGGCATCTTCTAGTAAAGAGTGA