1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaatacatgttgtgcttgacctacactaatttgatcgaagaaatcagctgatactttatatgttttgtatttaaaag
species | Oryza sativa |
transcript | LOC_Os01g39310.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAG GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTEST: gi|426285|gb|D22147.1|D22147
genomic: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaa ... tatttaaaagGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTT
EST: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAG GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTEST: gi|88665693|gb|CI715849.1|CI715849
genomic: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaa ... tatttaaaagGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTT
EST: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAG GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTEST: gi|88364128|gb|CI610472.1|CI610472
genomic: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaa ... tatttaaaagGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTT
EST: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAG GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTT
genomic: GCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaa ... tatttaaaagGAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGGTCGCTACTGTACGCTGTGAGGAAATCGGTAATGAGAAAATTGCCAGTTTTACAGCTGATGAGgtgattgcaatacatgttgtgcttgacctacactaatttgatcgaagaaatcagctgatactttatatgttttgtatttaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT