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TTCTGTGTGAAATTTTGCGGGCAACTCCAGAGGCTGCTACTGCTGATGCAGCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcctcttataaataacctgttataatgatttactgttttactgagaaaggcacgggggtcttccggctaacacaacaagatggtgggctagcc...
species | Oryza sativa |
transcript | LOC_Os08g22864.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAG GGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAATEST: gi|58691060|gb|CK079747.1|CK079747
genomic: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcc ... tggactgcagGGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
EST: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAG GGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAATEST: gi|58677228|gb|CK065915.1|CK065915
genomic: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcc ... tggactgcagGGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
EST: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAG GGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAATEST: gi|33678899|gb|CF307138.1|CF307138
genomic: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcc ... tggactgcagGGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
EST: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAG GGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAATEST: gi|58610277|gb|CK038129.1|CK038129
genomic: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcc ... tggactgcagGGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
EST: GCTGTTCAGACAGCTAGGCTTGCGGATAAGGACCCAGTGAAGGAAAAGAG GGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
genomic: GCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcc ... tggactgcagGGATGGATCAGAAGGCCTTTCTTTTGCTTTTCGCATTACGGATGCAGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGTGTGAAATTTTGCGGGCAACTCCAGAGGCTGCTACTGCTGATGCAGCTGTTCAGACAGCTAGGCTTGCAAATAAGGACCCAGTGAAGGAAAAGAGgcaagtatcctcttataaataacctgttataatgatttactgttttactgagaaaggcacgggggtcttccggctaacacaacaagatggtgggctagcc
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acggggg