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GCTGGACCGAGGAATGCATTTTTTGATGCATTATTCAAAGCTGTCGGTAGAATAAACATAATAGCAGAAGACCTGgtaagcattcttttttttttacatttatctaataaaaccatgattggtttttcttttgtggaccaatatggaagtagaaattcacataatttctccataa...
species | Oryza sativa |
transcript | LOC_Os07g43390.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGCATTATTCAAAGCTGTCGGTAGAATAAACATAATAGCAGAAGACCTG GGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTEST: gi|88223687|gb|CI223536.1|CI223536
genomic: ATGCATTATTCAAAGCTGTCGGTAGAATAAACATAATAGCAGAAGACCTGgtaagcattc ... ctatttgtagGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCT
EST: ATAGCAGAAGACCTG GGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTEST: gi|86504785|gb|CI147418.1|CI147418
genomic: ATAGCAGAAGACCTGgtaagcattc ... ctatttgtagGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCT
EST: TCGGTAGAATAAACATAATAGCAGAAGACCTG GGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCT
genomic: TCGGTAGAATAAACATAATAGCAGAAGACCTGgtaagcattc ... ctatttgtagGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGACCGAGGAATGCATTTTTTGATGCATTATTCAAAGCTGTCGGTAGAATAAACATAATAGCAGAAGACCTGgtaagcattcttttttttttacatttatctaataaaaccatgattggtttttcttttgtggaccaatatggaagtagaaattcacataatttctccataa
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa