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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAGgtcatacactgttgaaattttgagttattatctccgtatttgaaatgtccatagattttcactatcccccttttcatttccctcttag

Basic information

species Oryza sativa
transcript LOC_Os04g17130.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g17130.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G398731_T01 (Zea mays), 5'ss of exon 5
TTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAGgtcatacactgttgaaattttgagttattatctccgtatttgaaatgtccatagattttcactatcccccttt-tcatttccctcttag
|| ||||||||| | ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||| || |||||||||   || | | |||||||     ||| |   |  |||| |||| ||| | ||||||| ||||  |||| |  |||  |||||||
TTCTTTCTAGAGTTAATGAAGGTGCCAAGGGTTGAATCTAAGCTTAAGATATTTGCTTTCAAGATTCAGTTTCAGTCTCAGgtcatatgttggtaacattttga-----tattttgatcattgagatgttcatggcttttcaccatccaactttcttctttttctcttag

upper sequence: LOC_Os04g17130.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G417410_T01 (Zea mays), 5'ss of exon 2
TTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAGgtcatacactgttgaaattttgagttattatctccgtatttgaaatgtccatagattttcactatcccccttttcatttccctcttag
|| ||||||||| | ||||||||||||||||||||||||||| ||  |||||| |||||||||||||| ||||| || |||||||||  ||| | |  ||||||     ||| |      ||||  ||| ||||| ||||||    | || || |  ||| ||||||||
TTCTTTCTAGAGTTGATGAAGGTGCCGAGGGTTGAATCTAAGCTTCAGATATTCGCTTTCAAGATTCAGTTTCAGTCTCAGgtcatatgctggtaactttttga-----tattttgaccattgaggtgttcatagcttttcatatccacctttcttcttttcctcttag