1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAAGAGCCACACATCAGGTACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatactcgccccttaacaatccattacttatgagtaaatttcataataccagattttaagccatatatggtacacaaaacaccaggttttattaac...
species | Oryza sativa |
transcript | LOC_Os03g64320.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACACATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|29628010|gb|CB633021.1|CB633021
genomic: ACA-ATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|88284840|gb|CI406286.1|CI406286
genomic: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: AATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|88472172|gb|CI409443.1|CI409443
genomic: AATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|88470847|gb|CI408118.1|CI408118
genomic: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|88451046|gb|CI531641.1|CI531641
genomic: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTAEST: gi|27554461|gb|CA998361.1|CA998361
genomic: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
EST: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACG GGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
genomic: TACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatact ... aatgtttcagGGTCAATGCTGAAAACCCTCATTTCGCGAGATGACTCTGGTTCTTCATCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAAGAGCCACACATCAGGTACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGgtatgatactcgccccttaacaatccattacttatgagtaaatttcataataccagattttaagccatatatggtacacaaaacaccaggttttattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgcccc