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ACAATTTGGAGGATATACGCTAGTAAGGAACTCCAAAGACCTTTTTGAAAGTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttactcatatttgtgaagaatattttcttccttagatatacaaagtctttccctagcacaactacctgcttgtactgtgaaaatagtactacag...
species | Oryza sativa |
transcript | LOC_Os02g45650.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|88831123|gb|CI080547.1|CI080547
genomic: GTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: GGATCAGCCTGTAATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|88248064|gb|CI246682.1|CI246682
genomic: GGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: GTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|86903727|gb|CI300581.1|CI300581
genomic: GTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: ATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|86259979|gb|CI065852.1|CI065852
genomic: ATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: GTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|86490395|gb|CI133028.1|CI133028
genomic: GTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: GCCTGTAATAATTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|88223219|gb|CI223068.1|CI223068
genomic: GCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: AGGATCAGCCTGTAATAAGTGGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTCEST: gi|58661916|gb|CK050596.1|CK050596
genomic: AGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
EST: TGGGTTTCCCGAGGATCAGCCTGTAATAATTGCGGCTGATCATATTTCAG CACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
genomic: TGG-TTTC--GAGGATCAGCCTGTAATAATTG-GGCTGATCATATTTCAGgtatgtttac ... ttgattgtagCACACTATAATACCTGTCCAGCACCTTCTGAGTTTTTGTCTGAACCTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATTTGGAGGATATACGCTAGTAAGGAACTCCAAAGACCTTTTTGAAAGTTTTGGTTTCGAGGATCAGCCTGTAATAATTGGGCTGATCATATTTCAGgtatgtttactcatatttgtgaagaatattttcttccttagatatacaaagtctttccctagcacaactacctgcttgtactgtgaaaatagtactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT