1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctacaaaatcttccaatcttgatatgcagataaggcagtttcaccttgggattcttactgttgagtgaaatttacag
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|13420769|gb|AU174859.1|AU174859
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|55413992|gb|CV726368.1|CV726368
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88470794|gb|CI408065.1|CI408065
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88688627|gb|CI732203.1|CI732203
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: GGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|24468854|gb|CA305803.1|CA305803
genomic: GGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTCGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGACGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|86851837|gb|CI316406.1|CI316406
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|117230125|gb|CT846221.1|CT846221
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTCGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGACGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88319192|gb|CI513256.1|CI513256
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: GGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|86541345|gb|CI181551.1|CI181551
genomic: GGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88487810|gb|CI425081.1|CI425081
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88487832|gb|CI425103.1|CI425103
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|29641054|gb|CB646061.1|CB646061
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTCCGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88844338|gb|CI005711.1|CI005711
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|29685959|gb|CB682234.1|CB682234
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|29685960|gb|CB682235.1|CB682235
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|86259009|gb|CI004553.1|CI004553
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88446255|gb|CI563085.1|CI563085
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|86903280|gb|CI313643.1|CI313643
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCEST: gi|88283322|gb|CI404768.1|CI404768
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
EST: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAG GGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
genomic: TTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctac ... aaatttacagGGTGTTGATGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGgtgaacctacaaaatcttccaatcttgatatgcagataaggcagtttcaccttgggattcttactgttgagtgaaatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG