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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatcccttttcctctttccattgcatagtggattccatcgtctgattttgtttacgcacctattctctgcaattttaaaggaga...

Basic information

species Oryza sativa
transcript LOC_Os01g01710.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G056975_T01 (Zea mays), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatcccttttcctctttcc-attgcatagtggattccatcgtctgattttgtttacg-cacctattctctgcaattttaaaggaga
| ||||| || ||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||  ||  |  |   |   |   || || ||   |   |  | |||   |||||   || || || | | || |  ||   |    ||   ||  |  
CAATGGACCTAGCCTATGCAGCTGGCCGGGCTGGGGGCACCATGACAGGAGTTCTGAGCGCTGCTAATGAGAAGGCCGTGGAGTTGTTCATTGACGAGAAgtatgatcctttttttttgcatatcgacttttgcctgctttgttctagataa-atcgttgcatatttttcatgtcatcctttgatttggtttgccaaacat-

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G036290_T02 (Zea mays), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcat----catcatcccttttcctctttccattgcatagtggattccatcgtctgattttgtttacgcacctattctctgcaattttaaaggaga
| ||||| || || || ||||||||  | |||||||||||||||||||||||||| || ||||| || |||||||| |||||| ||||||||||||||||||| ||  ||       || || |   |  |  |||||   |  ||||   | | ||| || | ||    | | |  |  |  | | || |||| |   | |  
CAATGGACCTAGCGTACGCAGCTGGGCGGGCTGGGGGCACCATGACAGGAGTTCTAAGCGCTGCCAACGAGAAGGCCGTGGAGCTGTTCATCGATGAAAAgtacgattctttgtgcacaccaacttgtgcctgctttcttctagatagatcactgcat-gttttatgccatcttctgatttggtttgtg-aattattctgca--

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA05G02190.1 (Glycine max), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact-catcatcatcccttttcctctttccattgcatagtggattccatcgtctgatttt--gtttacgcacc----------tattctctgcaattttaaaggaga---------------------------------------------------------
| ||| |||| || | | | |||||  | ||||| ||||| |||||||||||||| ||||| || ||||| || ||||| ||| |||| || ||||||||||| |    |   | ||  |  | |     |     |       || ||||   || | | ||| |  |||    |||           ||| | ||||   || | |||  |                                                         
CCATGAATCTTGCATTTTCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAAAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagtttttgtgttattttttcctcaatacaaattagaaagctgtagattgtgtcatgtcattctaagttccaacactgcctgatgcatatgcactgct-cttcatagggtacatgtgtcttattggcaatgtaaattctccacttattggctattttgcttgttccag

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA17G09740.1 (Glycine max), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatcccttttcctctttccattgcata----gtggattccatcgtctgattttgtttacgcacctattctctgcaattttaaaggaga------------------------------------------------------------------------------------
| ||| |||| |||||||| |||||  | ||||| ||||| |||||||||||||| ||||| || |||||||| ||||| ||| |||| || ||||||||||| |    |  |  |  |   |||     || | | |    |    || ||||   || | | ||| |   | |  || | ||    |     |||    |                                                                                      
CCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagtttttagtttttttttttttctaaattacaaataagaaagctgtagattgtgtcatgtcattctaagttctaacatttttgaagtgtccttatccaatggctttatagatcatagggtacatcatacatgtgtcttattgtcaacgtaaattctcctctaattggctattttgctgcttccag

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: AT5G62790.1 (Arabidopsis thaliana), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatcccttttcctctttccattgcatagtggattccatcgtctgat-tttgtttacgcacctattctctgcaattttaaaggaga
| |||||||| || ||||| |||||| ||||||| ||||| ||||| |||||||| || || || |||||||| ||||| ||  ||||||| ||||||||||| || | |  |  |||    |||     | || ||    |  | ||| | |    |   | ||| | | | ||| | || | | ||             
CCATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACAATGACTGGAGTTCTCAGCGCCGCCAATGAGAAAGCTGTTGAAATGTTCATTGATGAAAAgtaaga-attatttttcag--ttttgagcatctcaatgaagttcttgatacgaatcacaattgtttatattctcactt-ttgtttacag------------

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv17s0000g08390.t01 (Vitis vinifera), 5'ss of exon 11
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatccctttt----cctctttccattgcatagtggattccatcgtctgattttgtttacgcacctattctctgcaattttaaaggaga
| |||||||| |||||||| |||||| | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| || |||||||||||||  | | ||     ||| |  |     | |     ||||        |||||| | || |     |   ||  |       | |    |||||       
CCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAgtatg-taattattccagtccttgctaggctcccaccttattgggatacttattcca-catcaggaccagggaaccgaaaatgcatttattgttttatgctt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86870222|gb|CI319328.1|CI319328
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|38478051|gb|CF962184.1|CF962184
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88849804|gb|CI001510.1|CI001510
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29613665|gb|CB618678.1|CB618678
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29620640|gb|CB625651.1|CB625651
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|38478000|gb|CF962133.1|CF962133
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGAC
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGAC
EST: gi|88971768|gb|CI389005.1|CI389005
EST:     TTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: TTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|58687978|gb|CK076665.1|CK076665
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88450585|gb|CI547085.1|CI547085
EST:     TGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: TGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|89192308|gb|CI049769.1|CI049769
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|14982024|gb|BI306702.1|BI306702
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|38478109|gb|CF962242.1|CF962242
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86258828|gb|CI000057.1|CI000057
EST:     GTTCTGAGTGCTGCTAATGAGAAGACTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86876218|gb|CI318309.1|CI318309
EST:     GTTGTGAGTGCTGCTAATGAGAAGGCTGTGGAATTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29688465|gb|CB684740.1|CB684740
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|58674748|gb|CK063435.1|CK063435
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|15854885|gb|BI807697.1|BI807697
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88460319|gb|CI529394.1|CI529394
EST:     AGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: AGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88273005|gb|CI388461.1|CI388461
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88828300|gb|CI000409.1|CI000409
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|218502386|gb|FG960211.1|FG960211
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|89184692|gb|CI007117.1|CI007117
EST:     GTTCTGAGTCCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86882082|gb|CI324246.1|CI324246
EST:     GTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|10423679|gb|AU108198.1|AU108198
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGANCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29620627|gb|CB625638.1|CB625638
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86850823|gb|CI338799.1|CI338799
EST:     AAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: AAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86843009|gb|CI342225.1|CI342225
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|33663678|gb|CF294645.1|CF294645
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|58677119|gb|CK065806.1|CK065806
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29620628|gb|CB625639.1|CB625639
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86832794|gb|CI332400.1|CI332400
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGTAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88963579|gb|CI029373.1|CI029373
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86836843|gb|CI347436.1|CI347436
EST:     TGAGTCCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: TGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|38475717|gb|CF959850.1|CF959850
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86502359|gb|CI144992.1|CI144992
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88508955|gb|CI436461.1|CI436461
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         NATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88261341|gb|CI364917.1|CI364917
EST:     GGCTCTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|89187005|gb|CI053408.1|CI053408
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|29620642|gb|CB625653.1|CB625653
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|15856004|gb|BI808816.1|BI808816
EST:     GTTCTGAGTGCTGCTAATGAGAA-GCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGA-CTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|58594821|gb|CF993129.1|CF993129
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATTTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|86875945|gb|CI325516.1|CI325516
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|88269691|gb|CI380989.1|CI380989
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCA
EST: gi|58595068|gb|CF993376.1|CF993376
EST:     GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAA                         GATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATTGCGACGCTC
genomic: GTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACAT-GCGACGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 62

CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacact ... gtttttgcagGATCGGGTACCTGGACATCTTCAAGGTGGTGGAGCTGACATGCGACGCTCATCGGAATGAGCTAGTAACAAGGCCATCACTGGAGGAGATCATACATTAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATGGATCTCGCCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATCGATGAAAAgtatgacactcatcatcatcccttttcctctttccattgcatagtggattccatcgtctgattttgtttacgcacctattctctgcaattttaaaggaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG