Skip to another splice site:
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 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgttatatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatcctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcag

Basic information

species Oryza sativa
transcript LOC_Os11g47330.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 10
TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgttatatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatc--ctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcag
| |||| |||||||| |||||||| || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||  ||  |||  |   | | | | |  | |     | |||  |||  || |||    ||| |||  ||       |   | | || |||||||||  ||    |||||   ||  | |  ||   | |||||    |  ||||||||||||    |||||| ||     ||| ||||
TTCAAGAATGCACATTTATGTCCGCCGAGGTGGTCCAAATTACCAATCTGGACTGGCTAAAATGCGTAAGCTTGGTGCAGAACTCGGCGTTCCAATTGAGgtactgatcta--gttgcctg-taagcatttttttggggtgatggaaaccctttagctcagaaa---atagatgtgaaaaatagcattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacat---atagatgagctgattgtgttttgaaaaaaaatccaccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87026947|gb|CI259600.1|CI259600
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88438300|gb|CI541044.1|CI541044
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89167861|gb|CI021560.1|CI021560
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86434803|gb|CI106036.1|CI106036
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86536928|gb|CI177134.1|CI177134
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88993356|gb|CI257784.1|CI257784
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAA-GCGACGATGACTGGAATCTGCAAGCAAGCAATTGA
EST: gi|88319331|gb|CI515792.1|CI515792
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|27548847|gb|CA767579.2|CA767579
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGTGTCCCGATTGAG                         GTGTATAGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89173357|gb|CI041250.1|CI041250
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88304259|gb|CI515532.1|CI515532
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|29623682|gb|CB628693.1|CB628693
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGTGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88456386|gb|CI560989.1|CI560989
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|15854608|gb|BI807420.1|BI807420
EST:     GCTGGCTAAAATGCGCACAGCTTGGCGCAGAACTCGGTGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCCATTGAA
genomic: GCTGGCTAAAATGCGCA-AGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88220355|gb|CI219915.1|CI219915
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88419989|gb|CI516438.1|CI516438
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89194489|gb|CI116926.1|CI116926
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCCATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89195503|gb|CI051616.1|CI051616
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88249216|gb|CI249065.1|CI249065
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86871193|gb|CI328395.1|CI328395
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86418647|gb|CI053448.1|CI053448
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88509747|gb|CI437253.1|CI437253
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89169878|gb|CI110237.1|CI110237
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCCCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|14981637|gb|BI306315.1|BI306315
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89185634|gb|CI047503.1|CI047503
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCCATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88843098|gb|CI371998.1|CI371998
EST:     GGCTGGCTAAAATG-GCAAGC-TGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86528348|gb|CI168554.1|CI168554
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88489838|gb|CI427110.1|CI427110
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAANCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|8856181|gb|AU093499.1|AU093499
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|89193655|gb|CI116288.1|CI116288
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|29687148|gb|CB683423.1|CB683423
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88485107|gb|CI422378.1|CI422378
EST:     CAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCNACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: CAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|33671920|gb|CF300159.1|CF300159
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88840778|gb|CI080232.1|CI080232
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88976891|gb|CI257587.1|CI257587
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88993379|gb|CI257807.1|CI257807
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86893933|gb|CI314922.1|CI314922
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86868810|gb|CI334182.1|CI334182
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88988022|gb|CI018065.1|CI018065
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88319309|gb|CI515770.1|CI515770
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|29667083|gb|CB663358.1|CB663358
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86526045|gb|CI166251.1|CI166251
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86837511|gb|CI345722.1|CI345722
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGGCT-GAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|86488927|gb|CI131560.1|CI131560
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88481337|gb|CI418608.1|CI418608
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88960097|gb|CI381975.1|CI381975
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88994381|gb|CI117335.1|CI117335
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|27920666|gb|CB096474.1|CB096474
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGTGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
EST: gi|88995393|gb|CI036968.1|CI036968
EST:     GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAG                         GTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA
genomic: GGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 43

TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatct ... atcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGTTCTGGGATCTGCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATTACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGCGTCCCGATTGAGgtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgttatatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatcctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcag

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