1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGgtatttctttgatttgggtaaccatatctttctgttttctgtgatggtctccaatctgcatctattacggtggtttggaattttcttaggcttctgtaaa...
species | Oryza sativa |
transcript | LOC_Os10g41590.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAG ATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAGEST: gi|58693037|gb|CK081724.1|CK081724
genomic: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGgtatttcttt ... gagttttcagATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAG
EST: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAG ATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAGEST: gi|58660498|gb|CK049178.1|CK049178
genomic: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGgtatttcttt ... gagttttcagATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAG
EST: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAG ATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAG
genomic: TTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGgtatttcttt ... gagttttcagATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGgtatttctttgatttgggtaaccatatctttctgttttctgtgatggtctccaatctgcatctattacggtggtttggaattttcttaggcttctgtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG