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GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaacaatcacctctccaagttggtgcatataaatttaaccaattgaatgcattataacctgtttattttaatgattcag
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAACAGGAAAGC-AACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|58675082|gb|CK063769.1|CK063769
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|428132|gb|D24280.1|D24280
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAAGATEST: gi|55411061|gb|CV723437.1|CV723437
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCA-GAT
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|27576373|gb|CA999067.1|CA999067
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: CGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|58692466|gb|CK081153.1|CK081153
genomic: CGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|27546502|gb|CA764746.2|CA764746
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|55411724|gb|CV724100.1|CV724100
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|58663314|gb|CK052000.1|CK052000
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|568031|gb|D38866.1|D38866
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGNGGAGAA GTCATAACTGCAGAGCTAGGAATNAATCTTGAGAAGTTCGAGCCTCAGATGEST: gi|33796275|gb|CF324004.1|CF324004
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
EST: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA GTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
genomic: AGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaa ... aatgattcagGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAAgtaagtttaacaatcacctctccaagttggtgcatataaatttaaccaattgaatgcattataacctgtttattttaatgattcag
- - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA