1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
species | Oryza sativa |
transcript | LOC_Os09g26880.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29669203|gb|CB665478.1|CB665478
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29655856|gb|CB652131.1|CB652131
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29674835|gb|CB671110.1|CB671110
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29668656|gb|CB664931.1|CB664931
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|3462549|gb|AF074787.1|AF074787
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAG-ACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29638872|gb|CB643881.1|CB643881
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29665769|gb|CB662044.1|CB662044
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29664946|gb|CB661221.1|CB661221
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29670253|gb|CB666528.1|CB666528
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29619465|gb|CB624477.1|CB624477
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29617472|gb|CB622484.1|CB622484
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29670275|gb|CB666550.1|CB666550
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29663941|gb|CB660216.1|CB660216
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|58695697|gb|CK084384.1|CK084384
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29663938|gb|CB660213.1|CB660213
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29629464|gb|CB634473.1|CB634473
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29656048|gb|CB652323.1|CB652323
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29664016|gb|CB660291.1|CB660291
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: GTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29639263|gb|CB644272.1|CB644272
genomic: GTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29673830|gb|CB670105.1|CB670105
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29613124|gb|CB618137.1|CB618137
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29663977|gb|CB660252.1|CB660252
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29628533|gb|CB633544.1|CB633544
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29663978|gb|CB660253.1|CB660253
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|88976985|gb|CI257681.1|CI257681
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: GAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29677489|gb|CB673764.1|CB673764
genomic: GAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29656046|gb|CB652321.1|CB652321
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29612883|gb|CB617896.1|CB617896
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|58691415|gb|CK080102.1|CK080102
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29668605|gb|CB664880.1|CB664880
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29667911|gb|CB664186.1|CB664186
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29623916|gb|CB628927.1|CB628927
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29667685|gb|CB663960.1|CB663960
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29628522|gb|CB633533.1|CB633533
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29664485|gb|CB660760.1|CB660760
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|33683879|gb|CF312118.1|CF312118
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: GTTCTTTATGTGATGAAAGTTCAG AATCTGGAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29673253|gb|CB669528.1|CB669528
genomic: GTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29672296|gb|CB668571.1|CB668571
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29668614|gb|CB664889.1|CB664889
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCEST: gi|29663939|gb|CB660214.1|CB660214
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
EST: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAG AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaaga ... ttacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC