1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AGTACATTCCATCGCTTTGACAAGTTCAATTTGAAGTATAATCCTTGTGGCCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttttgttttgtcttgtttcctacgtatttcagtaatcgatgccattctcgttttgttatattttctttcagttgtcgagaactgttactcatgttctatgttgaccttattctcagcataccctgtatatgtacaattctttaaaatgttgtattgtcttcttaatag
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|29671780|gb|CB668055.1|CB668055
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|88577196|gb|CI673756.1|CI673756
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|29663749|gb|CB660024.1|CB660024
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: ACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|58686177|gb|CK074864.1|CK074864
genomic: ACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|33793650|gb|CF322709.1|CF322709
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|33679011|gb|CF307250.1|CF307250
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|88579491|gb|CI688488.1|CI688488
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAAEST: gi|66924401|gb|CX111249.1|CX111249
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
EST: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAG GCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
genomic: CCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttt ... ttcttaatagGCCGATTTCTTGCTGAATTGACAAAAGAAGTATTTTCTGATCTTGAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTACATTCCATCGCTTTGACAAGTTCAATTTGAAGTATAATCCTTGTGGCCAATCCCGGCTGAGGGAGATCTTTCTTAAACAGGACAACCTTATTCAAGgtgcaccttttgttttgtcttgtttcctacgtatttcagtaatcgatgccattctcgttttgttatattttctttcagttgtcgagaactgttactcatgttctatgttgaccttattctcagcataccctgtatatgtacaattctttaaaatgttgtattgtcttcttaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC