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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATCATTTATCGGTTGACCCAACATCACGTCCAGTTGCCTGAAAATCTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAGgtaagcaaacaccattataactgccaagattatattgccattaaaagcttgtacagtccatattatcataataagctctgtctttatcattggaattcaa...

Basic information

species Oryza sativa
transcript LOC_Os07g40260.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33798177|gb|CF324947.1|CF324947
EST:     AGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAG                         GTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGT
genomic: AGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAGgtaagcaaac ... atttctacagGTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGT
EST: gi|55408880|gb|CV721256.1|CV721256
EST:     CTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAG                         GTCATGGTTCCGAG
genomic: CTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAGgtaagcaaac ... atttctacagGTCATGGTTCCGAG
EST: gi|88197947|gb|CI197797.1|CI197797
EST:     CTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAG                         GTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGT
genomic: CTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCCAAGAGgtaagcaaac ... atttctacagGTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGT