1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTATCCTTTGACTACAGAGGATTATGTCCACAGGATTGGGAGGACCGGTCGTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggagattatgtgccacacgttagcccttaggtttagccttacaacttaagttgtacttattgtcacttcaaaactatatacag
species | Oryza sativa |
transcript | LOC_Os07g20580.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|87031255|gb|CI259835.1|CI259835
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|163927944|gb|EG713520.1|EG713520
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|163926476|gb|EG712344.1|EG712344
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|89173588|gb|CI041481.1|CI041481
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|29673123|gb|CB669398.1|CB669398
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|24468677|gb|CA305626.1|CA305626
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GNGCTGGCAAGAAAGGTGNNGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGEST: gi|86593359|gb|CI257999.1|CI257999
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGG
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTEST: gi|86431877|gb|CI085488.1|CI085488
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
EST: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAG GGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
genomic: GTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggaga ... ctatatacagGGACTTGCTGGTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCCTTTGACTACAGAGGATTATGTCCACAGGATTGGGAGGACCGGTCGTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggagattatgtgccacacgttagcccttaggtttagccttacaacttaagttgtacttattgtcacttcaaaactatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA