1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTCAAGTAGGAAGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatgtacactaattattccagcttgcttttcgatgaatgatgttttaccatacaatttctgaaacagtgttttgcccactattttgtaaccag
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGTGGAGCTTCAAGAGCTGC-GTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|88834274|gb|CI000638.1|CI000638
genomic: CAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|109713099|gb|CI105707.1|CI105707
genomic: AATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: TTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|86842877|gb|CI342140.1|CI342140
genomic: TTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGAGCTGCGGTCAAAGA-AA ATTCAGGTCTTTCAATGTGCTA-TTGAGGAGATTTATCAAAAGCACTGTGGEST: gi|218484890|gb|FG963139.1|FG963139
genomic: AGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29641430|gb|CB646437.1|CB646437
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29627850|gb|CB632861.1|CB632861
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29630824|gb|CB635833.1|CB635833
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29665183|gb|CB661458.1|CB661458
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29624958|gb|CB629969.1|CB629969
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29677754|gb|CB674029.1|CB674029
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29623116|gb|CB628127.1|CB628127
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGTTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29677753|gb|CB674028.1|CB674028
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGACAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|86901931|gb|CI298578.1|CI298578
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: GGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29669621|gb|CB665896.1|CB665896
genomic: GGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29641429|gb|CB646436.1|CB646436
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGGEST: gi|29665182|gb|CB661457.1|CB661457
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCAGTGTGG
EST: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAG ATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCNAAAGCA
genomic: AGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatg ... ttgtaaccagATTCAGGTCTTTCAATGTGCTATTTGAGGAGATTTATCAAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTCAAGTAGGAAGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGGTCAAAGAGAGgttggtcatgtacactaattattccagcttgcttttcgatgaatgatgttttaccatacaatttctgaaacagtgttttgcccactattttgtaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA