1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGATAATGCTGGTCTGGACAGTGCTGAGCTGATCTCTCAGCTCCGAGCTGAGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgacgaataatcagaagttcttagtttcttttgaaccttagactgggtttgaaacttaacattatgatctgcag
species | Oryza sativa |
transcript | LOC_Os03g42220.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|86545840|gb|CI186046.1|CI186046
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|58609353|gb|CK037386.1|CK037386
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|86428658|gb|CI075339.1|CI075339
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|89163713|gb|CI100603.1|CI100603
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTGGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88833808|gb|CI077289.1|CI077289
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88547077|gb|CI477349.1|CI477349
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|86867958|gb|CI342809.1|CI342809
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: CTGGAATCGATGTCATCACAGGCAGC CTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|38478291|gb|CF962424.1|CF962424
genomic: CTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88959990|gb|CI381868.1|CI381868
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88199291|gb|CI199141.1|CI199141
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88842969|gb|CI371869.1|CI371869
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|29676854|gb|CB673129.1|CB673129
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|89179994|gb|CI044273.1|CI044273
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88272062|gb|CI388115.1|CI388115
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88264494|gb|CI368268.1|CI368268
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88382459|gb|CI535667.1|CI535667
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|29657047|gb|CB653322.1|CB653322
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88288899|gb|CI518030.1|CI518030
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|218484326|gb|FG955561.1|FG955561
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AACACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGEST: gi|88551392|gb|CI481446.1|CI481446
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGG
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|89169532|gb|CI109891.1|CI109891
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAGTTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|29616346|gb|CB621358.1|CB621358
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88289083|gb|CI520413.1|CI520413
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: CTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88962004|gb|CI097157.1|CI097157
genomic: CTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: ATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|86823862|gb|CI258850.1|CI258850
genomic: ATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88996823|gb|CI389489.1|CI389489
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88828956|gb|CI073826.1|CI073826
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|86428290|gb|CI074971.1|CI074971
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAAEST: gi|88255784|gb|CI353655.1|CI353655
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
EST: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGACATCACAGGCAGC GTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
genomic: AGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgac ... tgatctgcagGTTGGAGACATGCAAAAGCGAGGCATATCGGAGGCCTTCAAGGTGAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAATGCTGGTCTGGACAGTGCTGAGCTGATCTCTCAGCTCCGAGCTGAGCACCACAAGGAGAATTGCACTGCTGGAATCGATGTCATCACAGGCAGCgtaagttgacgaataatcagaagttcttagtttcttttgaaccttagactgggtttgaaacttaacattatgatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA