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ACTGGACATCATAAAATCAGGTGAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgatggtataatatgtattacctgttgacttgtttaggacatcctccttgctgatttactcaatgagactgatgttaattagagtaagtgaata...
species | Oryza sativa |
transcript | LOC_Os02g52470.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCAEST: gi|29640585|gb|CB645594.1|CB645594
genomic: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgat ... ggccttgtagAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCA
EST: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCAEST: gi|88466388|gb|CI529797.1|CI529797
genomic: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgat ... ggccttgtagAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCA
EST: CATTTCTAGTCAG AAGTTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCAEST: gi|88903644|gb|CI089182.1|CI089182
genomic: CATTTCTAGTCAGgtatagtgat ... ggccttgtagAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCA
EST: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCAEST: gi|218488923|gb|FG954497.1|FG954497
genomic: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgat ... ggccttgtagAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGAGGCTTACCA
EST: GGATGCCAGAGCAAGGAACATGTGAACGTTGTGGCTACATTTCTAGTCAG AAATTATGCAAAGCATGCGTCTTGCTGGACGGATTGAATCG
genomic: GGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgat ... ggccttgtagAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGACATCATAAAATCAGGTGAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGgtatagtgatggtataatatgtattacctgttgacttgtttaggacatcctccttgctgatttactcaatgagactgatgttaattagagtaagtgaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcctcc