1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGTTGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagtattgcactgtgaccattcgttgtcttccttgtactgttctggtgttacaaattatctcttcaaatgcagagaatcttgctcgctgctagtt...
species | Oryza sativa |
transcript | LOC_Os02g17320.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG GATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGEST: gi|33675270|gb|CF303509.1|CF303509
genomic: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAG
EST: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG GATCGGTTTACAEST: gi|29643325|gb|CB648332.1|CB648332
genomic: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACA
EST: GGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCNCA-CTG GATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTEST: gi|12623049|gb|AU173262.1|AU173262
genomic: GGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTC-CAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCT
EST: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG GATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGGGTGGTATCTCAGEST: gi|66922909|gb|CX109757.1|CX109757
genomic: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAG
EST: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG GCTCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGEST: gi|58687647|gb|CK076334.1|CK076334
genomic: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAG
EST: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTG GATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAG
genomic: TGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagta ... atgcgtgcagGATCGGTTTACACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagtattgcactgtgaccattcgttgtcttccttgtactgttctggtgttacaaattatctcttcaaatgcagagaatcttgctcgctgctagtt
- - - - - - - - - - - - - - - - AAGGAA