1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccgagaagttctgatgtttggacaataaaatatattatgaatgctgattctcctttagaatacacttgattgccacatgtctgtatgagtgtgc...
species | Oryza sativa |
transcript | LOC_Os02g07760.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218498176|gb|FG949780.1|FG949780
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGC-AAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218492832|gb|FG951181.1|FG951181
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: AGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACCTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAAEST: gi|88288968|gb|CI520298.1|CI520298
genomic: AGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATAC-TGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218482143|gb|FG968613.1|FG968613
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218492318|gb|FG946726.1|FG946726
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|88519470|gb|CI447124.1|CI447124
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218490731|gb|FG966180.1|FG966180
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|66918914|gb|CX105762.1|CX105762
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG G-TTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218488132|gb|FG951352.1|FG951352
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGEST: gi|58694576|gb|CK083263.1|CK083263
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTG
EST: AGCTGTTGGCNNNNNNNCTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAEST: gi|218491346|gb|FG955033.1|FG955033
genomic: AGCTGTTGGC-AAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
EST: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAG GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTGTGATGATGCA
genomic: CAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccga ... tattttacagGTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGgtataaccgagaagttctgatgtttggacaataaaatatattatgaatgctgattctcctttagaatacacttgattgccacatgtctgtatgagtgtgc
- - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa