1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattgacatttcatcaggatatattgtaacatcctcttcgcctcttcgctcctagagctgctacctgcacttatattgtgatattattcttactatcttacacacggtgaactcatgacctttaccag
species | Oryza sativa |
transcript | LOC_Os01g62040.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|89193193|gb|CI050491.1|CI050491
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|86483323|gb|CI125956.1|CI125956
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|88829069|gb|CI073939.1|CI073939
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|88518080|gb|CI445734.1|CI445734
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGC-AG GCCGATTCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCEST: gi|88260703|gb|CI362996.1|CI362996
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGA-TCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGC
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCCATCTTGAGGAAGTCAGTGGTCTTTACTTGGATGCTAAATCGTCGGCGEST: gi|109712273|gb|CI104881.1|CI104881
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|86495810|gb|CI138443.1|CI138443
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|29613696|gb|CB618709.1|CB618709
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCGEST: gi|88266771|gb|CI377673.1|CI377673
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
EST: CACCTCCCAGCGTAGTTGCAAAGGCTAATGGGAGAAAAAAGATCAGCAAG GCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
genomic: CACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattg ... cctttaccagGCCGATCTTGAGGAAGTCAGTGGTCTGTACTTGGATGCTAAATCGTCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGGAGAGAAAAGATCAGCAAGgtatgtattgacatttcatcaggatatattgtaacatcctcttcgcctcttcgctcctagagctgctacctgcacttatattgtgatattattcttactatcttacacacggtgaactcatgacctttaccag
- - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG