1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgatatatcttgaacttgtgatttcctaacttcccagcaacttaattttctgttatcttcttcctttttcttccttttttcatccttatttctat...
species | Oryza sativa |
transcript | LOC_Os01g48270.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|38480293|gb|CF964382.1|CF964382
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACEST: gi|86832493|gb|CI344743.1|CI344743
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAAC
EST: AGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86880937|gb|CI339213.1|CI339213
genomic: AGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|163918009|gb|EG715247.1|EG715247
genomic: AAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AATTGCCTGAAGTTGGTCCAEST: gi|4714792|gb|AU055909.1|AU055909
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86260068|gb|CI065941.1|CI065941
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86434699|gb|CI105932.1|CI105932
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|87021591|gb|CI275990.1|CI275990
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86489964|gb|CI132597.1|CI132597
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|25807028|gb|CA762989.1|CA762989
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86871715|gb|CI331092.1|CI331092
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: TCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86902884|gb|CI312261.1|CI312261
genomic: TCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|87029320|gb|CI250253.1|CI250253
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|11565056|gb|AU165692.1|AU165692
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|117243388|gb|CT843439.1|CT843439
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|58659866|gb|CK048546.1|CK048546
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86413422|gb|CI067827.1|CI067827
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|88832467|gb|CI019408.1|CI019408
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGCCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86425638|gb|CI070735.1|CI070735
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86260938|gb|CI066613.1|CI066613
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86498107|gb|CI140740.1|CI140740
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|2428954|gb|C73417.1|C73417
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|88228292|gb|CI227772.1|CI227772
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAEST: gi|86858837|gb|CI275075.1|CI275075
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
EST: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATG AGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
genomic: AAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgata ... aatgttgcagAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGgtacgtgatatatcttgaacttgtgatttcctaacttcccagcaacttaattttctgttatcttcttcctttttcttccttttttcatccttatttctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG