1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatgaactcatacacatactatcatgctctactctatgcagaacgcaaagtaatctcatgatgcctaaatttcatctatgcag
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|13420769|gb|AU174859.1|AU174859
genomic: GAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: TTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|55413992|gb|CV726368.1|CV726368
genomic: TTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|88470794|gb|CI408065.1|CI408065
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|24468854|gb|CA305803.1|CA305803
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTCGCACAGGTGAAGGCAGTGAEST: gi|86851837|gb|CI316406.1|CI316406
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|117230125|gb|CT846221.1|CT846221
genomic: GGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTCGCACAGGTGAAGGCAGTGAEST: gi|86541345|gb|CI181551.1|CI181551
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|88487810|gb|CI425081.1|CI425081
genomic: GGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|88487832|gb|CI425103.1|CI425103
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|29641054|gb|CB646061.1|CB646061
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTCCGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|88844338|gb|CI005711.1|CI005711
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|29685959|gb|CB682234.1|CB682234
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|29685960|gb|CB682235.1|CB682235
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|86259009|gb|CI004553.1|CI004553
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|86903280|gb|CI313643.1|CI313643
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAGTAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGAEST: gi|88283322|gb|CI404768.1|CI404768
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
EST: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAG GTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
genomic: GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatga ... atctatgcagGTGGTAAGATGGATGACATTACGGTTATTGTTGCACAGGTGAAGGCAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGgtacgcatgaactcatacacatactatcatgctctactctatgcagaacgcaaagtaatctcatgatgcctaaatttcatctatgcag
- - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - TGGAGG