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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGAGTTTCAGTGTTTGGTTTTGCAGGTGAGAGCATGGCAGTGAAGCAGGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctttctaccattttgacccttaattcatgtgctttacaatgtttttgtttatttgaaggttccatttagacagtttagacagagagacagatt...

Basic information

species Oryza sativa
transcript LOC_Os12g08830.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351000|gb|CI620660.1|CI620660
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCC
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCC
EST: gi|88432895|gb|CI690751.1|CI690751
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGG
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGG
EST: gi|33801711|gb|CF326727.1|CF326727
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|88429169|gb|CI690057.1|CI690057
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGA
EST: gi|88579972|gb|CI691969.1|CI691969
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCG
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCG
EST: gi|33664741|gb|CF295708.1|CF295708
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|66928198|gb|CX115046.1|CX115046
EST:     GGGCCTTCTGGCTGGGAGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|58607456|gb|CK035489.1|CK035489
EST:     GGGCCTTCTGGCTGGGAGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|14571429|gb|BI118797.1|BI118797
EST:     GGGCCTTCTGGCTGGGAGGATCCCTGGGCTCTCTGACCCTGATG--AAA-                         A-AGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|88433746|gb|CI582068.1|CI582068
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
EST: gi|88381593|gb|CI682257.1|CI682257
EST:     GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAG                         ---G-TTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA
genomic: GGGCCTTCTGGCTGGGCGGATCCCTGGGCTCTCTGACCCTGATGAAAAAGgttggttctt ... gtttgttcagACAGGTTGGAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGA