Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|3106808|gb|D42533.1|D42533EST: CTTCATCGTCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: CTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|86847458|gb|CI287028.1|CI287028EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|13420403|gb|AU174493.1|AU174493EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|88294668|gb|CI602388.1|CI602388EST: TGGGGCGCCGAGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTAAAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|88369565|gb|CI582760.1|CI582760EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|88468854|gb|CI696856.1|CI696856EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|58597504|gb|CK008032.1|CK008032EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|58590843|gb|CF989151.1|CF989151EST: TGGGGCGCCGAGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAG
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAG
EST:
gi|86601370|gb|CI251744.1|CI251744EST: GCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: GCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|86906360|gb|CI294483.1|CI294483EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGT-CCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|5038677|gb|AU070787.1|AU070787EST: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: TGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
EST:
gi|86601410|gb|CI253738.1|CI253738EST: CGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAA GTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
genomic: CGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
72 (downstream exon)
Score:
34CCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAgtaaagagct ... attctttaagGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTGATATCAGTATGCTCGGCTATATCAGTGGCAGCTTTT
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