Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattgcctcatctgatttttaatcaagatttttaactatagagatatggtttgtttatcaagaagccataagtaaagtaacaatagagttggtttacaagtaaaatttcagctgaatggcccttcccaacagagttaaccatctgaacatcatgtcatattgttgcag

Basic information

species Oryza sativa
transcript LOC_Os11g37950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g37950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G117971_T01 (Zea mays), 5'ss of exon 1
CGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattgcctcatctgatttttaatcaagatttttaactatagagatatggtttgtttatcaagaagccataagtaaagtaacaatagagttggtttacaagtaaaatttcagctgaatggcccttcccaacagagttaaccatctgaacatcatgtcatattgttgcag
||| | |||||| |||||||||||   |||||| |||||||| ||||| ||||||||||  || || |  || ||||| || || ||  |||| || ||||| |   |      | |||||     |   | |   |  |  |  ||   |||       |        |   | | ||| |    | |   |  |                                                                             
CGCCAGCAAGCCGCTGTCGTGGCGCATGAAGTACGGCTGGACGGCCTTCTGCGGGCCCGCCGGCCCCACCGGCCAGGCCGCGTGCGGGCAGTGTCTCCTGgtga-gctcaagctagctgatgaaataatgaaaccatgcatgagtgatgcatgagacccgtgctcgatcggggttaataatggtgtactgatgcag-----------------------------------------------------------------------------

upper sequence: LOC_Os11g37950.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G117942_T01 (Zea mays), 5'ss of exon 1
CGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattgcctcatctgatttttaatcaagatttttaactatagagatatggtttgtttatcaagaagccataagtaaagtaacaatagagttggtttacaagtaaaatttcagctgaatggcccttcccaacagagttaaccatctgaacatcatgtcatattgttgcag
||| | |||||| |||||||||||   |||||| |||||||| ||||| ||||||||||  || || |  || ||||| || || ||  |||| |||||||| |   |      | |||||    ||| ||    |  |    |   || |    |  |  |||  |  |  |  | |   |||   ||  |  || |  |                                                                        
CGCCAGCAAGCCGCTGTCGTGGCGCATGAAGTACGGCTGGACGGCCTTCTGCGGGCCCGCCGGCCCCACCGGCCAGGCCGCGTGCGGGCAGTGTCTTCTGgtga-gctcaagctagctgatga--aatgaaaccatgcatgagtgatgagacccgtgctcgatcggg--gttaataatggtgtactgatgca--tgatgcag-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|313083761|gb|HO213965.1|HO213965
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88472183|gb|CI409454.1|CI409454
EST:     TGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: TGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55435468|gb|CV730864.1|CV730864
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|38471582|gb|CF955713.1|CF955713
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|29625248|gb|CB630259.1|CB630259
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88743323|gb|CI766831.1|CI766831
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCGAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88577353|gb|CI673929.1|CI673929
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88401203|gb|CI685193.1|CI685193
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88388754|gb|CI592642.1|CI592642
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGAAGGGGGCGCAGATCACGGAGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88664363|gb|CI687908.1|CI687908
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGAT
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGAT
EST: gi|55437070|gb|CV731732.1|CV731732
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88368947|gb|CI675707.1|CI675707
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88213856|gb|CI213705.1|CI213705
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|86427350|gb|CI072447.1|CI072447
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88826707|gb|CI777272.1|CI777272
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55437068|gb|CV731731.1|CV731731
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|89198937|gb|CI253011.1|CI253011
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|66913359|gb|CX100207.1|CX100207
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTG                         CTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88453877|gb|CI691559.1|CI691559
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATC
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATC
EST: gi|88742166|gb|CI765674.1|CI765674
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55435785|gb|CV731028.1|CV731028
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|86895160|gb|CI310330.1|CI310330
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55434496|gb|CV730373.1|CV730373
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55440195|gb|CV733407.1|CV733407
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88368563|gb|CI673049.1|CI673049
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGG
EST: gi|55434505|gb|CV730374.1|CV730374
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88452156|gb|CI552864.1|CI552864
EST:     CTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: CTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|55440193|gb|CV733406.1|CV733406
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88199791|gb|CI199641.1|CI199641
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88743103|gb|CI766611.1|CI766611
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCAC
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCAC
EST: gi|88761741|gb|CI771297.1|CI771297
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGAC
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGAC
EST: gi|88736154|gb|CI759662.1|CI759662
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCA
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCA
EST: gi|88251485|gb|CI349913.1|CI349913
EST:     GTCCTAGGGGTCAGGCTCCATGTGGCAAATCCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAC
genomic: GTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88448263|gb|CI555118.1|CI555118
EST:     GCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCNTGGACCAG
genomic: GCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88745815|gb|CI769175.1|CI769175
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACAC
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACAC
EST: gi|55435466|gb|CV730863.1|CV730863
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88845947|gb|CI084677.1|CI084677
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88740188|gb|CI763696.1|CI763696
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|86597388|gb|CI280525.1|CI280525
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|87018238|gb|CI265530.1|CI265530
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
EST: gi|88460136|gb|CI695338.1|CI695338
EST:     GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTG                         GTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG
genomic: GCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 67

CGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGgtaataattg ... attgttgcagGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGA




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