1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGACGCTGGCGCTGCCCGACCTCGCCGACGAGGAGTTGCTGAGATCTCTCGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggcttgatttggtttcttttcttcttctctggatcgagtaggttagcttgttgatgtaattaatgttgtgatttttgtgtactttagttttac...
species | Oryza sativa |
transcript | LOC_Os11g36070.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29623258|gb|CB628269.1|CB628269
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29626153|gb|CB631164.1|CB631164
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29665385|gb|CB661660.1|CB661660
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCTAATTTTCEST: gi|88398341|gb|CI588229.1|CI588229
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAT GCAATATTGACCTGATTTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTEST: gi|88721762|gb|CI745061.1|CI745061
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATT-GCTGAAGCAAGGTCTAAAGAGATCTCGAATTTT
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATGGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|58679846|gb|CK068533.1|CK068533
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88731451|gb|CI755064.1|CI755064
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29626975|gb|CB631986.1|CB631986
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29672693|gb|CB668968.1|CB668968
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29623293|gb|CB628304.1|CB628304
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88352092|gb|CI626092.1|CI626092
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88398357|gb|CI588245.1|CI588245
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTTGCTGAAGCAAG-TCTAAAGAGATCTCGAATTTTEST: gi|88398358|gb|CI588246.1|CI588246
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATT-GCTGAAGCAAGGTCTAAAGAGATCTCGAATTTT
EST: AGTGAAGAGGCATATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAT GCAATATTTGACCTGATTGCTGAAGCAAGGTCTAAATAGATCTCGAATTTTEST: gi|88730714|gb|CI754327.1|CI754327
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATT-GACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTT
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGNAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGACGCTGGCGCTGCCCGACCTCGCCGACGAGGAGTTGCTGAGATCTCTCGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggcttgatttggtttcttttcttcttctctggatcgagtaggttagcttgttgatgtaattaatgttgtgatttttgtgtactttagttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT