1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCCCAAGCTGGATCGGAATCCGCCGCTGCCAAGGAGCCGTCGTTCAAGGAGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctccttaatccctctcttctccccccctatctcccgttccattccgctccaatccaacctagggtttcgtttaattttgcgaagaaatggcgcta...
species | Oryza sativa |
transcript | LOC_Os11g34300.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAG GTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATEST: gi|29665211|gb|CB661486.1|CB661486
genomic: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctcct ... atttctcaagGTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTAT
EST: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAG GTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATEST: gi|58592902|gb|CF991210.1|CF991210
genomic: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctcct ... atttctcaagGTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTAT
EST: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAG GTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATEST: gi|3766577|gb|AU030687.1|AU030687
genomic: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctcct ... atttctcaagGTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTAT
EST: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAG GTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATEST: gi|117248491|gb|CT862737.1|CT862737
genomic: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctcct ... atttctcaagGTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTAT
EST: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAG GTTCAAAAGTCCGAAAACAAGGAGGGTGAGTGGCGGTATCATGTCCATTAT
genomic: AGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctcct ... atttctcaagGTTCAAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCAAGCTGGATCGGAATCCGCCGCTGCCAAGGAGCCGTCGTTCAAGGAGGGCGAGAGAGTGCTCGCCTACCACGGCCCGCTCCTCTACGAGGCCAAGgtccgctccttaatccctctcttctccccccctatctcccgttccattccgctccaatccaacctagggtttcgtttaattttgcgaagaaatggcgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgttcc