1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagcttagctcctctcgtgctttgaataggggaaccccgagttaagtttgtgcgcttgctgttttgtattttaggaaacctaaggagtaaggaga...
species | Oryza sativa |
transcript | LOC_Os09g29470.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCEST: gi|29632057|gb|CB637066.1|CB637066
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCEST: gi|29632177|gb|CB637186.1|CB637186
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
EST: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCGTACCCC AAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
genomic: TCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagct ... tacttcttagAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCgtaagaagcttagctcctctcgtgctttgaataggggaaccccgagttaagtttgtgcgcttgctgttttgtattttaggaaacctaaggagtaaggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA