1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGATGGACGACGGGCCCAAGTACGCGCAGATACCGACGAGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccgcccccgagctcctcgcctcgacggcttagggtttcgtgttcatgcttgtttccgtatcgaatcgagggttaatgcttattcgggaggagt...
species | Oryza sativa |
transcript | LOC_Os07g43060.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|11610378|gb|AU166054.1|AU166054
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|58686363|gb|CK075050.1|CK075050
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|88833830|gb|CI077311.1|CI077311
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|86423375|gb|CI060948.1|CI060948
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: GCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|8857385|gb|AU094703.1|AU094703
genomic: GCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|163919996|gb|EG709802.1|EG709802
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|163928022|gb|EG709470.1|EG709470
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|87019382|gb|CI279892.1|CI279892
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: GCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATEST: gi|88976243|gb|CI024460.1|CI024460
genomic: GCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
EST: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAG TTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
genomic: ACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccg ... gattgcacagTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGGACGACGGGCCCAAGTACGCGCAGATACCGACGAGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGgtgcgcaccgcccccgagctcctcgcctcgacggcttagggtttcgtgttcatgcttgtttccgtatcgaatcgagggttaatgcttattcgggaggagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgacggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggag