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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGgtattgatgcttgtgcttccagtctttttgcctgcagcaaatagatttgagttatgctgtactgtttttctagttattctatgatctatgccagactgtc...

Basic information

species Oryza sativa
transcript LOC_Os06g20340.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g20340.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G174170_T02 (Zea mays), 5'ss of exon 2
ACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGgtattgatgcttgtgcttccagtctttttgcctgcagcaaatagatttga-gttatgctgtactgtttttctagttattctatgatctatgccagactgtc
|||||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||| || |||||| |||||||||||||||||| ||| ||| |||||||  |  ||  |  |     ||| | | ||||  |    ||  ||     ||   |||    ||| | ||| |||     |  | |   |   |     
ACTGTACCTTTGTGCCAAAACCTTTACCGGAATTCATTCACTTATCACTGCCTTCAAGAGGACAAGACTCTGCAGTTTGATGATGCAAACCAGTTTCTAGgtatgcacact-attttcttcttctgtgtacctgttgattgtaagttaaccatttccctggtaagttctcctaattaaatgctcctttgaacttcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24468882|gb|CA305831.1|CA305831
EST:     TCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAG                         AACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGA
genomic: TCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGgtattgatgc ... tcaacttcagAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGA
EST: gi|33675778|gb|CF304017.1|CF304017
EST:     CCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAG                         AACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGA
genomic: CCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGgtattgatgc ... tcaacttcagAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGA