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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATATGGCTCGAAATTTGTGAGTAATGGACAACCAGGGCCTGCACAGAATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagttttaatccttgtccgcagtagatattgcaaatgagaagctattttttcataccttgacatgatctgtggcaccacattattttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g03660.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03660.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
ACAATATGGCTCGAAATTTGTGAGTAATGGACAACCAGGGCCTGCACAGAATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagttttaatccttgtc-cgcagtagatattgcaaatgagaagctattttttcataccttgacatg-atctgtggcaccacat-tattttgcag---
||||||||| ||||||||| ||||| ||||||| || ||  |||| || ||||||||||| || || ||  | || || ||||||||||| |||||||||||   ||  ||       |   |  ||| |  ||  |  |    |  |   | |   ||     ||||  || | |      | || ||| || |     
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatatatatatatatatattacccttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688534|gb|CK077221.1|CK077221
EST:     ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAG                         TTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA
genomic: ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagtttt ... tattttgcagTTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA
EST: gi|218485783|gb|FG945169.1|FG945169
EST:     ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAG                         TTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA
genomic: ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagtttt ... tattttgcagTTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA
EST: gi|218499826|gb|FG954400.1|FG954400
EST:     ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAG                         TTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA
genomic: ATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagtttt ... tattttgcagTTTGTTAATGATCTGCATGCTTTGATTAGTCCTCCTGCCAAAGGAACTCCA