1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGGCGCCGGGGCAGCTGAACCTCGACGAGTCGCCGTCGTGGGGCTCCCGCAGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGGgtaagccccgaacctatcgattctccccccaatctcaattcgatttctaatcccttgaaaaacgccgttccaatccggctgcgttgttcgtag
species | Oryza sativa |
transcript | LOC_Os05g32360.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGG GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAAEST: gi|88351784|gb|CI654327.1|CI654327
genomic: AGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGGgtaagccccg ... ttgttcgtagGCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAA
EST: AGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGG GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAAEST: gi|300216016|gb|HO088642.1|HO088642
genomic: AGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGGgtaagccccg ... ttgttcgtagGCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAA
EST: AGATCGGCGAGGGCACATACGG GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAAEST: gi|218484487|gb|FG944130.1|FG944130
genomic: AGATCGGCGAGGGCACATACGGgtaagccccg ... ttgttcgtagGCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAA
EST: AGGGCACATACGG GCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAA
genomic: AGGGCACATACGGgtaagccccg ... ttgttcgtagGCAAGTGTACATGGCGAGGGAGACGGAGACGCAGGAGATCGTCGCGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCCGGGGCAGCTGAACCTCGACGAGTCGCCGTCGTGGGGCTCCCGCAGCGTCGATTGCTTCGAGAAGCTCGAGCAGATCGGCGAGGGCACATACGGgtaagccccgaacctatcgattctccccccaatctcaattcgatttctaatcccttgaaaaacgccgttccaatccggctgcgttgttcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT