1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CCAGCTCGTTCCCCGCCGGCGCCGCCCAGCGCCGATCTCCGTCCCGGGGGCAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcacccgtacgcagcatcctctcttccatcccctctctaccccgcaccttttctcttcgccttaacccttagctgaaaccgcatgccgcag
species | Oryza sativa |
transcript | LOC_Os04g14654.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88301457|gb|CI597150.1|CI597150
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88760782|gb|CI770338.1|CI770338
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88738544|gb|CI762052.1|CI762052
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88350673|gb|CI617528.1|CI617528
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88723438|gb|CI746948.1|CI746948
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|29635893|gb|CB640902.1|CB640902
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|117229564|gb|CT859877.1|CT859877
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CAGCAGCGGGGGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCG GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
genomic: CAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcaccc ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCTCGTTCCCCGCCGGCGCCGCCCAGCGCCGATCTCCGTCCCGGGGGCAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGgtgagcacccgtacgcagcatcctctcttccatcccctctctaccccgcaccttttctcttcgccttaacccttagctgaaaccgcatgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT