1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGTAGCTAGCTAGCTAGCCATGGCGGCGAATGGCGAGGGTGGCGGCGACCCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcagtggcaccagctgcatttcggtttgtttgtttattatttttttttttttttgggggggggggggggtttggctcgtggtgtggcgatgttc...
species | Oryza sativa |
transcript | LOC_Os03g58480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|33678648|gb|CF306887.1|CF306887
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|33675922|gb|CF304161.1|CF304161
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|33675394|gb|CF303633.1|CF303633
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|33676020|gb|CF304259.1|CF304259
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|33675598|gb|CF303837.1|CF303837
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGGEST: gi|29628404|gb|CB633415.1|CB633415
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
EST: CCGGCAGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCAT TCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
genomic: CCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcag ... atccttgcagTCCAATGGTGAAAGAGGCTGTGGAAATGTCCACAGACGAAGAATCAGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTAGCTAGCTAGCTAGCCATGGCGGCGAATGGCGAGGGTGGCGGCGACCCGGCGGCGCGGAGGCGGTGGGATCTGACGAACAAGGGTGCCGAGAGCATgtaatggcagtggcaccagctgcatttcggtttgtttgtttattatttttttttttttttgggggggggggggggtttggctcgtggtgtggcgatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg