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GCGTGAGCCAGCAGCAGCCATGGTGCTGTTCTCGGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatcccaccaccacctcttcctcctcatccgattgtctccggtttcccgtcactagggccccgatctggatctaggcgcgacgcgtggtggatg...
species | Oryza sativa |
transcript | LOC_Os03g50480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|11863329|gb|AU066043.2|AU066043
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|58688355|gb|CK077042.1|CK077042
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGNCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|29612833|gb|CB617846.1|CB617846
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|29689598|gb|CB685873.1|CB685873
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|29671540|gb|CB667815.1|CB667815
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|58670502|gb|CK059188.1|CK059188
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|29682384|gb|CB678659.1|CB678659
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|33676013|gb|CF304252.1|CF304252
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|58667231|gb|CK055917.1|CK055917
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCGCGGATTACCTCCAGAACTTTGTGCAATCCACEST: gi|29614791|gb|CB619804.1|CB619804
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGC-CTCATTACCTCCAGAACTTTGTGCAATCCAC
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|29671584|gb|CB667859.1|CB667859
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACAEST: gi|58668595|gb|CK057281.1|CK057281
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: AAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTATCTCCAGAACTTTGTGCAATCCACAEST: gi|33675599|gb|CF303838.1|CF303838
genomic: AAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
EST: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG GTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatc ... ctgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGAGCCAGCAGCAGCCATGGTGCTGTTCTCGGTGACGAAGAAGGCCACCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgtttcccatcccaccaccacctcttcctcctcatccgattgtctccggtttcccgtcactagggccccgatctggatctaggcgcgacgcgtggtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggccccg