1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGAAGGAAGGAAGGAAGGAATCGCAAGGCGAAGAGTCGGAGCTGGCGGAGGAGGAGGTGCTCGCGATGGGGTCCGAGGGATCCGCCGGGGTCGTCGTCGgtgagtagccagggaacccttgccgaattttggttttgtggtggtggatttgggtggggtggggggatcttcgcggccggtcaagaacgcgagagttggt...
species | Oryza sativa |
transcript | LOC_Os03g50440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCCGAGGGATCCGCCGGGGTCGTCGTCG TTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCAEST: gi|88415272|gb|CI586478.1|CI586478
genomic: GTCCGAGGGATCCGCCGGGGTCGTCGTCGgtgagtagcc ... atctctgcagTTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCA
EST: GGAGGAGGTGCTCGCGATGGGGTCCGAGGGATCCGCCGGGGTCGTCGTCG TTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCAEST: gi|58592031|gb|CF990339.1|CF990339
genomic: GGAGGAGGTGCTCGCGATGGGGTCCGAGGGATCCGCCGGGGTCGTCGTCGgtgagtagcc ... atctctgcagTTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCA
EST: GGGTCCGAGGGATCCG-CGGGGTCGTCGTCG TTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCA
genomic: GGGTCCGAGGGATCCGCCGGGGTCGTCGTCGgtgagtagcc ... atctctgcagTTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAGGAAGGAAGGAAGGAATCGCAAGGCGAAGAGTCGGAGCTGGCGGAGGAGGAGGTGCTCGCGATGGGGTCCGAGGGATCCGCCGGGGTCGTCGTCGgtgagtagccagggaacccttgccgaattttggttttgtggtggtggatttgggtggggtggggggatcttcgcggccggtcaagaacgcgagagttggt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggccg