1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTCAAGGAGTTCAACGGCAACAACATCCGCGACACCTTCCGCGTCCTCCTCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAGgtagtactagtacacccgatccgaaaattcccaaaacaaaatccaatcacgcattccctcaattcctttttctacgattcgattcgattcgtgtgtgtatgattgaaaag
species | Oryza sativa |
transcript | LOC_Os03g27230.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAG GTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAGEST: gi|86830180|gb|CI290354.1|CI290354
genomic: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAGgtagtactag ... gattgaaaagGTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAG
EST: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAG GTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAGEST: gi|29616760|gb|CB621772.1|CB621772
genomic: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAGgtagtactag ... gattgaaaagGTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAG
EST: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAG GTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAG
genomic: TCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAGgtagtactag ... gattgaaaagGTTGGGAGAATGGCGGGGCAATTCGCGAAGCCGAGGTCGGAGGCGTTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAAGGAGTTCAACGGCAACAACATCCGCGACACCTTCCGCGTCCTCCTCCAGATGTCCGCCGTCCTCACCTTCGGCGGCCAAATGCCCGTCATCAAGgtagtactagtacacccgatccgaaaattcccaaaacaaaatccaatcacgcattccctcaattcctttttctacgattcgattcgattcgtgtgtgtatgattgaaaag
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