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CGCCTGCCACAGCGTCGCATGCCTCGCTCCCTCGCCGGCGACCTCACCGATCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccctctcccccctcctaattctcctcctgttggctttctcccggccgcgctgcgatctgggagccgctggcccagcggcggagatgccggatc...
species | Oryza sativa |
transcript | LOC_Os03g12590.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88401623|gb|CI588564.1|CI588564
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88388647|gb|CI683432.1|CI683432
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88377051|gb|CI597835.1|CI597835
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88443658|gb|CI591883.1|CI591883
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88414473|gb|CI691639.1|CI691639
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88454333|gb|CI569905.1|CI569905
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88333728|gb|CI643760.1|CI643760
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88405887|gb|CI591282.1|CI591282
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88328220|gb|CI651227.1|CI651227
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88394604|gb|CI605945.1|CI605945
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88311189|gb|CI570263.1|CI570263
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88370130|gb|CI585135.1|CI585135
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88313845|gb|CI597476.1|CI597476
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGGGCAGCCGTACATGAAGAAGGATGACGAAGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88387536|gb|CI583054.1|CI583054
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88574218|gb|CI665987.1|CI665987
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGEST: gi|88310289|gb|CI659079.1|CI659079
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
EST: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACG TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
genomic: TCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccc ... gcttttacagTTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTGCCACAGCGTCGCATGCCTCGCTCCCTCGCCGGCGACCTCACCGATCCGGAGATGGCGCAGCCGTACATGAAGAAGGATGACGACGACGAGGACGgttagtcccctctcccccctcctaattctcctcctgttggctttctcccggccgcgctgcgatctgggagccgctggcccagcggcggagatgccggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggccgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcggcg